Shahed University

Multiclass classification of patients during different stages of Alzheimer’s disease using fMRI time-series

Ali Motie-Nasrabadi | Hessam Ahmadi | Emad Fatemizadeh
URL :   http://research.shahed.ac.ir/WSR/WebPages/Report/PaperView.aspx?PaperID=148133
Date :  2020/08/16
Publish in :    Biomedical Physics & Engineering Express

Link :  https://iopscience.iop.org/article/10.1088/2057-1976/abaf5e/meta
Keywords :Alzheimers Disease (AD), Functional connectivity analysis,fMRI

Abstract :
Alzheimers Disease (AD) begins several years before the symptoms develop. It starts with Mild Cognitive Impairment (MCI) which can be separated into Early MCI and Late MCI (EMCI and LMCI). Functional connectivity analysis and classification are done among the different stages of illness with Functional Magnetic Resonance Imaging (fMRI). In this study, in addition to the four stages including healthy, EMCI, LMCI, and AD, the patients have been tracked for a year. Indeed, the classification has been done among 7 groups to analyze the functional connectivity changes in one year in different stages. After generating the functional connectivity graphs for eliminating the weak links, three different sparsification methods were used. In addition to simple thresholding, spectral sparsification based on effective resistance and sparse autoencoder were performed in order to analyze the effect of sparsification routine on classification results. Also, instead of extracting common features, the correlation matrices were reshaped to a correlation vector and used as a feature vector to enter the classifier. Since the correlation matrix is symmetric, in another analysis half of the feature vector was used, moreover, the Genetic Algorithm (GA) also utilized for feature vector dimension reduction. The non-linear SVM classifier with a polynomial kernel applied. The results showed that the autoencoder sparsification method had the greatest discrimination power with the accuracy of 98.35 for classification when the feature vector was the full correlation matrix.